Burkholderia pseudomallei Genome Database Query

Genome Database
> Query genes by Accession number
> Query genes by gene name keywords
> Query genes by position
> Extract genome fragment as GeneBank format

Sequence, Motif and Functional classes
> Query genes by Pfam
> Query genes by COG
> Browse genes by functional classes
> BLAST search against this database

Gene Ontology Implementation
> Browse genes by Gene Ontology
> Search Gene Ontology term
> Search genes by Gene Ontology term
> Browse the virulent genes

 

---

Query Genes by Gene Accession Number or Gene ID

By Accession no.	eg. BP00099
By Gene ID

 

---

Query Genes by Gene Name Keywords:

Space for	AND	OR	NOT

---

Query Genes by Pfam

By accession no.
By keyword

---

Query Genes by COG

By accession no.
By keyword

---

Functional Classes

Translation, ribosomal structure and biogenesis [genes]
RNA processing and modification [genes]
Transcription [genes]
Replication, recombination and repair [genes]
Chromatin structure and dynamics [genes]
Cell cycle control, cell division, chromosome partitioning [genes]
Nuclear structure [genes]
Defense mechanisms [genes]
Signal transduction mechanisms [genes]
Cell wall/membrane/envelope biogenesis [genes]
Cell motility [genes]
Cytoskeleton [genes]
Extracellular structures [genes]
Intracellular trafficking, secretion, and vesicular transport [genes]
Posttranslational modification, protein turnover, chaperones [genes]
Energy production and conversion [genes]
Carbohydrate transport and metabolism [genes]
Amino acid transport and metabolism [genes]
Nucleotide transport and metabolism [genes]
Coenzyme transport and metabolism [genes]
Lipid transport and metabolism [genes]
Inorganic ion transport and metabolism [genes]
Secondary metabolites biosynthesis, transport and catabolism [genes]
General function prediction only [genes]
Function unknown [genes]

---

Search by Gene Sequence (Blast):

BLAST Server
(DNA sequences are the two chromosomes.
Protein sequences were formated from the database here)

---

Browse Genes by Gene Ontology:

(-) GO:0003673 : Gene Ontology
       (+)  GO:0003674 : molecular function   [ Browse ]
       (+)  GO:0008150 : biological process    [ Browse ]
       (+)  GO:0005575 : cellular component  [ Browse ]

Virulence Gene Database [Browse]

---

Search GO terms :

Space for	AND	OR	NOT

---

Search Genes by GO term Keywords:

---

Query Genes by Position:

Chromosome:	1 2
From:
To:

---

Extract Genome Fragment (GeneBank Format)

Chromosome:	1 2
From:
To:
Name:

---